Publications

Wu, L., Gingery, M., Abebe, M., Arambula, D., Czornyj, E., Handa, S., Khan, H., Liu, M., Pohlschroder, M. Shaw, K. L., Du, A., Guo, H., Ghosh, P., Miller, J. F. & Zimmerly, S. (2017). Diversity-generating retroelements: natural variation, classification and evolution inferred from a large-scale genomic survey. Nucleic acids research, 46: 11-24.

Handa, S., Paul, B. G., Miller, J. F., Valentine, D. L. & Ghosh, P. (2016). Conservation of the C-type lectin fold for accommodating massive sequence variation in archaeal diversity-generating retroelements. BMC Struct Biol 16: 13.

Paul, B. G., Burstein, D., Castelle, C. J., Handa, S., Arambula, D., Czornyj, E., Thomas, B. C., Ghosh, P., Miller, J. F., Banfield, J. F. & Valentine, D. L. (2017). Retroelement- guided protein diversification abounds in vast lineages of Bacteria and Archaea. Nat Microbiol 2: 17045.

Paul, B. G., Bagby, S. C., Czornyj, E., Arambula, D., Handa, S., Sczyrba, A., Ghosh, P., Miller, J. F. & Valentine, D. L. (2015). Targeted diversity generation by intraterrestrial archaea and archaeal viruses. Nat Commun 6: 6585.

Guo, H., Arambula, D., Ghosh, P., & Miller, J. F. (2014). Diversity-generating retroelements in phage and bacterial genomes. Microbiology spectrum, 2(6).

Arambula, D., Wong, W., Medhekar, B. A., Guo, H., Gingery, M., Czornyj, E., Liu, M., Dey, S., Ghosh, P. & Miller, J. F. (2013). Surface display of a massively variable lipoprotein by a Legionella diversity-generating retroelement. Proc Natl Acad Sci U S A 110: 8212-8217.

Guo, H., Longping, V. T., Nieh, A. W., Czornyj, E., Williams, S., Oukil, S., Liu, V. B. & Miller, J. F. (2011). Target site recognition by a diversity-generating retroelement. PLoS genetics, 7: e1002414.

Guo, H., Longping, V. T., Barbalat, R., Sivaamnuaiphorn, S., Xu, M., Doulatov, S., & Miller, J. F. (2008). Diversity-generating retroelement homing regenerates target sequences for repeated rounds of codon rewriting and protein diversification. Molecular cell, 31: 813-823.

Doulatov, S., Hodes, A., Dai, L., Mandhana, N., Liu, M., Deora, R., et al. (2004). Tropism switching in Bordetella bacteriophage defines a family of diversity-generating retroelements. Nature, 431: 476.

Liu, M., Deora, R., Doulatov, S. R., Gingery, M., Eiserling, F. A., Preston, A., et al. (2002). Reverse transcriptase-mediated tropism switching in Bordetella bacteriophage. Science, 295: 2091-2094.